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    LOC4343871 peroxisome biogenesis factor 10 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343871, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4343871
    Gene description
    peroxisome biogenesis factor 10
    Locus tag
    OSNPB_070608800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 12.2), leaves after flowering (RPKM 11.7) and 6 other tissues See more
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    Genomic context

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    See LOC4343871 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (25264319..25268817)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (25039205..25043735)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA snoR135 Neighboring gene 40S ribosomal protein S3-1 Neighboring gene probable small nuclear ribonucleoprotein G Neighboring gene stress-response A/B barrel domain-containing protein UP3 Neighboring gene stress-response A/B barrel domain-containing protein UP3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein import into peroxisome matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in peroxisomal membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peroxisome biogenesis factor 10
    Names
    OSJNBb0018L13.8
    Os07g0608800
    putative Peroxisome assembly protein 10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      25264319..25268817
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792091.3 → XP_015647577.1  peroxisome biogenesis factor 10

      UniProtKB/TrEMBL
      B7E3W3, B8B8C7, B9FYC7, Q6YTX9
      Conserved Domains (3) summary
      COG5574
      Location:297 → 383
      PEX10; RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
      cd16527
      Location:334 → 373
      RING-HC_PEX10; RING finger, HC subclass, found in peroxin-10 (PEX10) and similar proteins
      pfam04757
      Location:43 → 275
      Pex2_Pex12; Pex2 / Pex12 amino terminal region
    Nucleotide Protein
    Heading Accession and Version

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