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    LOC4332652 small ribosomal subunit protein bS1c [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332652, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4332652
    Gene description
    small ribosomal subunit protein bS1c
    Locus tag
    OSNPB_030315800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in leaves before flowering (RPKM 187.2), roots after flowering (RPKM 83.4) and 3 other tissues See more
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    Genomic context

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    See LOC4332652 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (11405333..11409602, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (11351445..11355768, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA Z247 Neighboring gene transcription factor MYB2-like Neighboring gene galactinol synthase 1 Neighboring gene protein ALP1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast stroma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small ribosomal subunit protein bS1c
    Names
    30S ribosomal protein S1, chloroplastic
    Os03g0315800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      11405333..11409602 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772980.3 → XP_015628466.1  small ribosomal subunit protein bS1c

      UniProtKB/TrEMBL
      A2XG06, B9F848, Q10MB2
      Conserved Domains (2) summary
      PRK07400
      Location:62 → 358
      PRK07400; 30S ribosomal protein S1; Reviewed
      cl30861
      Location:348 → 394
      PRK09915; MdtP family multidrug efflux transporter outer membrane subunit
    Nucleotide Protein
    Heading Accession and Version

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