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    LOC9269038 fasciclin-like arabinogalactan protein 7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9269038, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC9269038
    Gene description
    fasciclin-like arabinogalactan protein 7
    Locus tag
    OSNPB_090482780
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC9269038 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (23006902..23008635, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (18611253..18613145, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene putative BPI/LBP family protein At1g04970 Neighboring gene uncharacterized LOC9271634 Neighboring gene uncharacterized LOC9271885 Neighboring gene chalcone 4'-O-glucosyltransferase-like Neighboring gene uncharacterized LOC9270116 Neighboring gene UDP-glycosyltransferase 88B1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in plant-type secondary cell wall biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    fasciclin-like arabinogalactan protein 7
    Names
    Os09g0482780

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      23006902..23008635 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015755223.3 → XP_015610709.1  fasciclin-like arabinogalactan protein 7

      Conserved Domains (1) summary
      pfam02469
      Location:64 → 197
      Fasciclin; Fasciclin domain
    Nucleotide Protein
    Heading Accession and Version

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