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    LOC4343037 thaumatin-like protein 1b [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343037, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4343037
    Gene description
    thaumatin-like protein 1b
    Locus tag
    OSNPB_070419300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1123_B01.120
    Expression
    Ubiquitous expression in flowers (RPKM 5.3), roots after flowering (RPKM 2.5) and 6 other tissues See more
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    Genomic context

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    See LOC4343037 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (13539885..13547559)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (13388764..13392089)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4343034 Neighboring gene cytochrome P450 709B2-like Neighboring gene BTB/POZ domain-containing protein At5g41330 Neighboring gene uncharacterized LOC136357506 Neighboring gene sterol 3-beta-glucosyltransferase UGT80A2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in defense response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    thaumatin-like protein 1b
    Names
    Os07g0419300
    P0025D09.136

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      13539885..13547559
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026027151.2 → XP_025882936.1  thaumatin-like protein 1b

      UniProtKB/TrEMBL
      B8ARP2, Q69V90, Q7F267
      Conserved Domains (1) summary
      cd09218
      Location:31 → 269
      TLP-PA; allergenic/antifungal thaumatin-like proteins: plant and animal homologs
    Nucleotide Protein
    Heading Accession and Version

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