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    LOC4346242 uncharacterized LOC4346242 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346242, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4346242
    Gene description
    uncharacterized LOC4346242
    Locus tag
    OSNPB_080548500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1112_E06.21
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (27658256..27660831)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (27510960..27513757)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin ligase BIG BROTHER-related Neighboring gene chaperone protein dnaJ 11, chloroplastic Neighboring gene uncharacterized LOC112936227 Neighboring gene thaumatin-like protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell surface receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4346242
    Names
    Os08g0548500
    P0544G09.37
    putative armadillo repeat containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      27658256..27660831
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015793997.3 → XP_015649483.1  uncharacterized protein LOC4346242

      UniProtKB/TrEMBL
      A0A0P0XJ45, A2YXT9, Q6YT02, Q6Z9B5
      Conserved Domains (2) summary
      PLN03200
      Location:133 → 219
      PLN03200; cellulose synthase-interactive protein; Provisional
      sd00043
      Location:183 → 213
      ARM; armadillo repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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