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    LOC4330878 uncharacterized LOC4330878 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330878, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330878
    Gene description
    uncharacterized LOC4330878
    Locus tag
    OSNPB_020772300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1611_C08.13
    Expression
    Ubiquitous expression in flower buds (RPKM 3.5), flowers (RPKM 2.8) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (33092783..33095704)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (32597416..32600379)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4330875 Neighboring gene putative transcription elongation factor SPT5 homolog 1 Neighboring gene uncharacterized LOC107277523 Neighboring gene uncharacterized LOC4330879 Neighboring gene uncharacterized LOC9267910

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone H2A acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone H4 acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables peptide-serine-alpha-N-acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4330878
    Names
    GCN5-related N-acetyltransferase protein-like
    Os02g0772300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      33092783..33095704
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015768395.3 → XP_015623881.1  uncharacterized protein LOC4330878

      UniProtKB/TrEMBL
      B9FPD7
      Conserved Domains (2) summary
      pfam00583
      Location:147 → 224
      Acetyltransf_1; Acetyltransferase (GNAT) family
      cl27023
      Location:32 → 58
      TraY; TraY domain

    RNA

    1. XR_001542961.3 RNA Sequence

    2. XR_001542962.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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