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    LOC4326851 uncharacterized LOC4326851 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326851, updated on 18-Sep-2024

    Summary

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    Gene symbol
    LOC4326851
    Gene description
    uncharacterized LOC4326851
    Locus tag
    OSNPB_010664500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 73.1), flowers (RPKM 63.9) and 6 other tissues See more
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    Genomic context

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    See LOC4326851 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (27727592..27731576)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (27144912..27149026)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene probable receptor-like protein kinase At2g42960 Neighboring gene uncharacterized LOC112938282 Neighboring gene mitogen-activated protein kinase 8-like Neighboring gene CTD small phosphatase-like protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein phosphatase inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4326851
    Names
    Os01g0664500
    P0003E08.12-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      27727592..27731576
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789618.3 → XP_015645104.1  uncharacterized protein LOC4326851

      UniProtKB/TrEMBL
      A0A5S6R6J9, A0A8J8XFG3, A2WTI3, A2ZWA2, Q0JKM1, Q5SN58
      Conserved Domains (1) summary
      pfam04667
      Location:36 → 110
      Endosulfine; cAMP-regulated phosphoprotein/endosulfine conserved region

    2. XM_015789544.3 → XP_015645030.1  uncharacterized protein LOC4326851

      UniProtKB/TrEMBL
      A0A5S6R6J9, A0A8J8XFG3, A2WTI3, A2ZWA2, Q0JKM1, Q5SN58
      Conserved Domains (1) summary
      pfam04667
      Location:36 → 110
      Endosulfine; cAMP-regulated phosphoprotein/endosulfine conserved region
    Nucleotide Protein
    Heading Accession and Version

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