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    LOC4341340 ent-kaurene oxidase-like 5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341340, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4341340
    Gene description
    ent-kaurene oxidase-like 5
    Locus tag
    OSNPB_060568600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsKO5; OsKOL5; OsKOS2; CYP701A9
    Expression
    Restricted expression toward roots before flowering (RPKM 15.3) See more
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    Genomic context

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    See LOC4341340 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (22841444..22851323, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (21982654..21992528, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene transmembrane 9 superfamily member 7 Neighboring gene V-type proton ATPase subunit B 1 Neighboring gene small nucleolar RNA Z247 Neighboring gene ent-sandaracopimaradiene 3-hydroxylase-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The rice dwarf virus P2 protein interacts with ent-kaurene oxidases in vivo, leading to reduced biosynthesis of gibberellins and rice dwarf symptoms. Zhu S, et al. Plant Physiol, 2005 Dec. PMID 16299167, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ent-kaurene oxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ent-kaurene oxidation to kaurenoic acid IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in gibberellin biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ent-kaurene oxidase-like 5
    Names
    Cytochrome P450 701A9
    Ent-kaurene oxidase 5
    LOC_Os06g37224
    OSJNBa0062E01.13
    NP_001408556.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001421627.1 → NP_001408556.1  ent-kaurene oxidase-like 5

      Status: VALIDATED

      Source sequence(s)
      AK071743, AP014962, AY660664, CI600015
      UniProtKB/Swiss-Prot
      A0A0P0WXZ0, Q5Z5S6, Q68YV9

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      22841444..22851323 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5Z5S6.1 GenPept UniProtKB/Swiss-Prot:Q5Z5S6

    Gene LinkOut

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