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    LOC4336693 uncharacterized LOC4336693 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336693, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4336693
    Gene description
    uncharacterized LOC4336693
    Locus tag
    OSNPB_040566800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 6.9), flower buds (RPKM 6.5) and 6 other tissues See more
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    Genomic context

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    See LOC4336693 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (28990059..29000456, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (28484012..28494464, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene putative Myb family transcription factor At1g14600 Neighboring gene mitochondrial import inner membrane translocase subunit TIM23-1-like Neighboring gene aluminum-activated malate transporter 10 Neighboring gene uncharacterized LOC4336696

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables gamma-tubulin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables microtubule minus-end binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytoplasmic microtubule organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in meiotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in microtubule nucleation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in spindle assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in centrosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in equatorial microtubule organizing center IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of gamma-tubulin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in spindle pole IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4336693
    Names
    Os04g0566800
    Os04g0566900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      28990059..29000456 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026024833.2 → XP_025880618.1  uncharacterized protein LOC4336693 isoform X2

      UniProtKB/TrEMBL
      B8AT36
      Conserved Domains (1) summary
      pfam04130
      Location:854 → 1091
      Spc97_Spc98; Spc97 / Spc98 family

    2. XM_015781217.3 → XP_015636703.1  uncharacterized protein LOC4336693 isoform X1

      UniProtKB/TrEMBL
      B8AT36, Q7XUI5
      Conserved Domains (2) summary
      pfam04130
      Location:874 → 1184
      Spc97_Spc98; Spc97 / Spc98 family
      pfam17681
      Location:160 → 420
      GCP_N_terminal; Gamma tubulin complex component N-terminal

    RNA

    1. XR_010740925.1 RNA Sequence

    2. XR_010740926.1 RNA Sequence

    3. XR_001545581.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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