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    LOC4325990 cysteine-rich receptor-like protein kinase 44 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325990, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4325990
    Gene description
    cysteine-rich receptor-like protein kinase 44
    Locus tag
    OSNPB_010127700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 98.0), leaves before flowering (RPKM 27.4) and 4 other tissues See more
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    Genomic context

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    See LOC4325990 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (1525741..1529113)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (1518115..1521626)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene tetraketide alpha-pyrone reductase 2 Neighboring gene Bowman-Birk type trypsin inhibitor Neighboring gene mannose-6-phosphate isomerase 1 Neighboring gene uncharacterized LOC136355173 Neighboring gene transcription factor MYB62

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cysteine-rich receptor-like protein kinase 44
    Names
    Os01g0127700
    putative receptor-like protein kinase At4g00960

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      1525741..1529113
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015773408.3 → XP_015628894.1  cysteine-rich receptor-like protein kinase 44

      UniProtKB/TrEMBL
      B9EZB1
      Conserved Domains (2) summary
      smart00219
      Location:68 → 332
      TyrKc; Tyrosine kinase, catalytic domain
      cd14066
      Location:68 → 332
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
    Nucleotide Protein
    Heading Accession and Version

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