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    LOC4326954 uncharacterized LOC4326954 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326954, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4326954
    Gene description
    uncharacterized LOC4326954
    Locus tag
    OSNPB_010927300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flowers (RPKM 6.8), flower buds (RPKM 3.8) and 3 other tissues See more
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    Genomic context

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    See LOC4326954 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (41312291..41315542, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (40668608..40672141, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 Neighboring gene uncharacterized LOC136354907 Neighboring gene trihelix transcription factor ASR3 Neighboring gene uncharacterized LOC4326955 Neighboring gene inactive leucine-rich repeat receptor-like protein kinase CORYNE

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4326954
    Names
    OSJNBa0093F16.28
    Os01g0927300
    P0482D04.23

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      41312291..41315542 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026022445.2 → XP_025878230.1  uncharacterized protein LOC4326954 isoform X2

      UniProtKB/TrEMBL
      A0A0N7KEC1, A0A5S6R9G0, B8A8I1, Q0JGE7, Q5JK04
      Conserved Domains (1) summary
      pfam00403
      Location:49 → 92
      HMA; Heavy-metal-associated domain

    2. XM_026022444.2 → XP_025878229.1  uncharacterized protein LOC4326954 isoform X1

      UniProtKB/TrEMBL
      B8A8I1
      Conserved Domains (1) summary
      pfam00403
      Location:49 → 93
      HMA; Heavy-metal-associated domain
    Nucleotide Protein
    Heading Accession and Version

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