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    LOC4352692 octanoyltransferase LIP2p, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352692, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4352692
    Gene description
    octanoyltransferase LIP2p, chloroplastic
    Locus tag
    OSNPB_120596000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 5.3), leaves after flowering (RPKM 4.1) and 6 other tissues See more
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    Genomic context

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    See LOC4352692 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (25739377..25744715, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (25029777..25032347, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene SKP1-like protein 9 Neighboring gene wall-associated receptor kinase-like 14 Neighboring gene uncharacterized LOC107279779 Neighboring gene RING-H2 finger protein ATL65 Neighboring gene uncharacterized LOC136354709

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables lipoyl(octanoyl) transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein lipoylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in tRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nucleolar ribonuclease P complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of ribonuclease MRP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    octanoyltransferase LIP2p, chloroplastic
    Names
    Os12g0596000
    plastidial lipoyltransferase 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      25739377..25744715 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764331.3 → XP_015619817.1  octanoyltransferase LIP2p, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A0A8J8Y6D3, A2ZMC3, A3CJ34, Q0IM62, Q2QMP8
      Conserved Domains (1) summary
      cd16444
      Location:76 → 286
      LipB; lipoyl/octanoyl transferase

    2. XM_015764332.3 → XP_015619818.1  octanoyltransferase LIP2p, chloroplastic isoform X2

      Conserved Domains (1) summary
      cl14057
      Location:76 → 205
      BPL_LplA_LipB; Biotin/lipoate A/B protein ligase family
    Nucleotide Protein
    Heading Accession and Version

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