LOC4324201 probable protein phosphatase 2C 6 [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4324201
Gene description: probable protein phosphatase 2C 6
Locus tag: OSNPB_010583100
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: ABIL1; PP2C06; OsABIL1; OsPP2C06
Expression: Ubiquitous expression in roots before flowering (RPKM 40.6), leaves before flowering (RPKM 24.3) and 6 other tissues See more
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Genomic context

Location:: chromosome: 1

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	1	NC_089035.1 (23191986..23197918)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	1	NC_029256.1 (22617729..22624096)

Chromosome 1 - NC_089035.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables cation binding	IEA Inferred from Electronic Annotation more info	PubMed
enables protein serine/threonine phosphatase activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in peptidyl-threonine dephosphorylation	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: probable protein phosphatase 2C 6

Names: ABI1-like protein 1; LOC_Os01g40094; OsABI-LIKE1

NP_001415001.1

EC 3.1.3.16

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001428072.1 → NP_001415001.1 probable protein phosphatase 2C 6

Status: VALIDATED

Source sequence(s)

AK242616, AU174683

UniProtKB/TrEMBL

B8AAR7, B9EXQ9