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    LOC4346094 UDP-glucuronate 4-epimerase 6 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346094, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4346094
    Gene description
    UDP-glucuronate 4-epimerase 6
    Locus tag
    OSNPB_080526100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1191_A10.124
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    Genomic context

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    See LOC4346094 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (26311653..26313608, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (26165056..26167242, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene probable glucan endo-1,3-beta-glucosidase A6 Neighboring gene uncharacterized LOC107278708 Neighboring gene uncharacterized LOC136351362 Neighboring gene PGR5-like protein 1A, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Enzymatic characterization and comparison of various poaceae UDP-GlcA 4-epimerase isoforms. Gu X, et al. J Biochem, 2009 Oct. PMID 19564155
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    UDP-glucuronate 4-epimerase 6
    Names
    Os08g0526100
    UDP-glucuronic acid 4-epimerase
    putative type 1 capsule synthesis gene(CapI)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      26311653..26313608 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015793009.3 → XP_015648495.1  UDP-glucuronate 4-epimerase 6

      UniProtKB/TrEMBL
      Q0J4A6, Q2MJA8, Q84QV1
      Conserved Domains (1) summary
      cl21454
      Location:126 → 456
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
    Nucleotide Protein
    Heading Accession and Version

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