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    LOC4340297 protein LATERAL BRANCHING OXIDOREDUCTASE 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340297, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4340297
    Gene description
    protein LATERAL BRANCHING OXIDOREDUCTASE 1
    Locus tag
    OSNPB_060178700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsHSL2
    Expression
    Biased expression in roots before flowering (RPKM 13.9), flower buds (RPKM 1.4) and 1 other tissue See more
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    Genomic context

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    See LOC4340297 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (4063835..4066463)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (3900447..3903105)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene protein LATERAL BRANCHING OXIDOREDUCTASE 1 Neighboring gene protein SRG1 Neighboring gene protein LATERAL BRANCHING OXIDOREDUCTASE 1 Neighboring gene uncharacterized LOC136356864 Neighboring gene pyrophosphate-energized vacuolar membrane proton pump

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. A rice gene that confers broad-spectrum resistance to β-triketone herbicides. Maeda H, et al. Science, 2019 Jul 26. PMID 31346065
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein LATERAL BRANCHING OXIDOREDUCTASE 1
    Names
    LOC_Os06g08060
    OSJNBa0035I03.7
    Os06g0178700
    putative Fe(II)/2-oxoglutarate-dependent oxygenase
    putative iron/ascorbate-dependent oxidoreductase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      4063835..4066463
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015786529.3 → XP_015642015.1  protein LATERAL BRANCHING OXIDOREDUCTASE 1

      UniProtKB/TrEMBL
      A2Y9Y5, Q0DE44, Q8H618
      Conserved Domains (1) summary
      PLN00417
      Location:12 → 351
      PLN00417; oxidoreductase, 2OG-Fe(II) oxygenase family protein
    Nucleotide Protein
    Heading Accession and Version

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