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    LOC4341742 uncharacterized LOC4341742 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341742, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4341742
    Gene description
    uncharacterized LOC4341742
    Locus tag
    OSNPB_060661000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4341742 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (28103804..28112567, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (27242823..27247637, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene protein STRUBBELIG-RECEPTOR FAMILY 3 Neighboring gene uncharacterized LOC136356862 Neighboring gene uncharacterized LOC136356861 Neighboring gene B-box zinc finger protein 32 Neighboring gene putative clathrin assembly protein At5g57200

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4341742
    Names
    Os06g0661000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      28103804..28112567 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787377.2 → XP_015642863.1  uncharacterized protein LOC4341742

      UniProtKB/TrEMBL
      A0A0P0WZR5, Q0DAD6
      Conserved Domains (3) summary
      smart00575
      Location:759 → 786
      ZnF_PMZ; plant mutator transposase zinc finger
      pfam03108
      Location:239 → 297
      DBD_Tnp_Mut; MuDR family transposase
      pfam10551
      Location:438 → 538
      MULE; MULE transposase domain

    RNA

    1. XR_010741825.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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