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    LOC4341996 leucine-rich repeat extensin-like protein 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341996, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4341996
    Gene description
    leucine-rich repeat extensin-like protein 2
    Locus tag
    OSNPB_060704500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0018H04.1
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    Genomic context

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    See LOC4341996 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (30623121..30625050)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (29754530..29756481)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene zinc finger CCCH domain-containing protein 46-like Neighboring gene uncharacterized LOC4341995 Neighboring gene delta-aminolevulinic acid dehydratase, chloroplastic-like Neighboring gene protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    leucine-rich repeat extensin-like protein 2
    Names
    Os06g0704500
    putative extensin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      30623121..30625050
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015786945.3 → XP_015642431.1  leucine-rich repeat extensin-like protein 2

      UniProtKB/TrEMBL
      Q5Z8W0
      Conserved Domains (3) summary
      cd00116
      Location:94 → 198
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:94 → 115
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:116 → 174
      LRR_8; Leucine rich repeat
    Nucleotide Protein
    Heading Accession and Version

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