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    LOC4335404 uncharacterized LOC4335404 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335404, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4335404
    Gene description
    uncharacterized LOC4335404
    Locus tag
    OSNPB_040293700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 6.3), flower buds (RPKM 5.0) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (13069074..13113625)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (12875206..12882901)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At1g56130 Neighboring gene uncharacterized LOC136356003 Neighboring gene short chain dehydrogenase MYCFIDRAFT_6125-like Neighboring gene noroxomaritidine/norcraugsodine reductase Neighboring gene uncharacterized LOC136356180

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in transposition IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4335404
    Names
    Os04g0293700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      13069074..13113625
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066309915.1 → XP_066166012.1  uncharacterized protein LOC4335404 isoform X3

      UniProtKB/TrEMBL
      A2XR48

    2. XM_066309916.1 → XP_066166013.1  uncharacterized protein LOC4335404 isoform X3

      UniProtKB/TrEMBL
      A2XR48

    3. XM_015781788.3 → XP_015637274.2  uncharacterized protein LOC4335404 isoform X1

    4. XM_066309917.1 → XP_066166014.1  uncharacterized protein LOC4335404 isoform X4

    5. XM_015781789.3 → XP_015637275.1  uncharacterized protein LOC4335404 isoform X5

      UniProtKB/TrEMBL
      A0A0P0W870, B7EZG7, Q0JEC7
      Conserved Domains (1) summary
      pfam03004
      Location:211 → 291
      Transposase_24; Plant transposase (Ptta/En/Spm family)

    6. XM_066309914.1 → XP_066166011.1  uncharacterized protein LOC4335404 isoform X2

    7. XM_066309918.1 → XP_066166015.1  uncharacterized protein LOC4335404 isoform X6

    Nucleotide Protein
    Heading Accession and Version

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