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    LOC4345316 grpE protein homolog 2, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345316, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4345316
    Gene description
    grpE protein homolog 2, mitochondrial
    Locus tag
    OSNPB_080338700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 54.2), mature seeds (RPKM 50.8) and 6 other tissues See more
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    Genomic context

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    See LOC4345316 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (15309472..15312683, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (15232918..15236372, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4345314 Neighboring gene uncharacterized LOC9269071 Neighboring gene uncharacterized LOC136351561 Neighboring gene uncharacterized LOC4345317

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables adenyl-nucleotide exchange factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein homodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein-folding chaperone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables unfolded protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein folding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein import into mitochondrial matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of PAM complex, Tim23 associated import motor IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    grpE protein homolog 2, mitochondrial
    Names
    OSJNBa0062G05.3
    Os08g0338700
    P0702G08.16
    putative chaperone GrpE

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      15309472..15312683 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795551.3 → XP_015651037.1  grpE protein homolog 2, mitochondrial isoform X2

      UniProtKB/TrEMBL
      A0A0P0XF73, B8B9V2, B9G0F2, Q6Z0G0
      Conserved Domains (2) summary
      PRK14160
      Location:77 → 294
      PRK14160; heat shock protein GrpE; Provisional
      cd00446
      Location:144 → 293
      GrpE; nucleotide exchange factor GrpE

    2. XM_015795550.3 → XP_015651036.1  grpE protein homolog 2, mitochondrial isoform X1

      Conserved Domains (2) summary
      PRK14157
      Location:78 → 317
      PRK14157; heat shock protein GrpE; Provisional
      cd00446
      Location:168 → 317
      GrpE; nucleotide exchange factor GrpE
    Nucleotide Protein
    Heading Accession and Version

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