U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4341193 abscisic acid receptor PYL3-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341193, updated on 17-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4341193
    Gene description
    abscisic acid receptor PYL3-like
    Locus tag
    OSNPB_060527800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in mature seeds (RPKM 23.1) and milk grains (RPKM 20.5) See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4341193 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (20435217..20440799, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (19580055..19585422, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene cyclic nucleotide-gated ion channel 1 Neighboring gene cyclic nucleotide-gated ion channel 1 Neighboring gene uncharacterized LOC112939383 Neighboring gene abscisic acid receptor PYL3-like Neighboring gene spermine synthase Neighboring gene flavin-containing monooxygenase FMO GS-OX-like 9

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables abscisic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein phosphatase inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables signaling receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in abscisic acid-activated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    abscisic acid receptor PYL3-like
    Names
    Bet v I allergen-like
    OSJNBa0043B22.39
    Os06g0527800
    P0001B01.19
    abscisic acid receptor PYL8

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      20435217..20440799 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015786368.3 → XP_015641854.1  abscisic acid receptor PYL3-like isoform X1

      UniProtKB/TrEMBL
      A2YDM7
      Conserved Domains (1) summary
      cd07821
      Location:55 → 190
      PYR_PYL_RCAR_like; Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins

    2. XM_015786373.3 → XP_015641859.1  abscisic acid receptor PYL3-like isoform X3

      UniProtKB/TrEMBL
      A2YDM7
      Conserved Domains (1) summary
      cd07821
      Location:55 → 194
      PYR_PYL_RCAR_like; Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins

    3. XM_015786371.3 → XP_015641857.1  abscisic acid receptor PYL3-like isoform X2

      UniProtKB/TrEMBL
      A0A0P0WX79, A2YDM7, Q0DBT8, Q652Y8
      Conserved Domains (1) summary
      cd07821
      Location:55 → 200
      PYR_PYL_RCAR_like; Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins

    RNA

    1. XR_010742249.1 RNA Sequence

    2. XR_010742250.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials