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    LOC4347807 probable E3 ubiquitin-protein ligase ATL44 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347807, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4347807
    Gene description
    probable E3 ubiquitin-protein ligase ATL44
    Locus tag
    OSNPB_090554200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4347807 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (26400866..26401774, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (21956395..21957345, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene protein PLASTID MOVEMENT IMPAIRED 1 Neighboring gene mitochondrial phosphate carrier protein 1, mitochondrial Neighboring gene protein PIN-LIKES 7 Neighboring gene uncharacterized LOC107278882

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    probable E3 ubiquitin-protein ligase ATL44
    Names
    Os09g0554200
    RING-H2 finger protein ATL44
    putative RING-H2 finger protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      26400866..26401774 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015755419.3 → XP_015610905.1  probable E3 ubiquitin-protein ligase ATL44

      UniProtKB/TrEMBL
      A0A0P0XRD9, A2Z3W7, Q0IZR5
      Conserved Domains (2) summary
      COG5243
      Location:106 → 201
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
      cl17238
      Location:105 → 148
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
    Heading Accession and Version

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