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    LOC4346239 uncharacterized LOC4346239 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346239, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4346239
    Gene description
    uncharacterized LOC4346239
    Locus tag
    OSNPB_080548200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1112_E06.15
    Expression
    Ubiquitous expression in roots before flowering (RPKM 56.0), leaves after flowering (RPKM 56.0) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (27644327..27648101)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (27497197..27501091)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene flavonoid 3'-monooxygenase CYP75B137 Neighboring gene MYB-like transcription factor ODO1 Neighboring gene E3 ubiquitin ligase BIG BROTHER-related Neighboring gene chaperone protein dnaJ 11, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ER retention sequence binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein retention in ER lumen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cis-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4346239
    Names
    Os08g0548200
    P0544G09.31
    putative ER lumen protein-retaining receptor C28H8.4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      27644327..27648101
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795101.3 → XP_015650587.1  uncharacterized protein LOC4346239

      UniProtKB/TrEMBL
      B8B9D5, B9FYG0, Q6YT06, Q6Z9B9
      Conserved Domains (1) summary
      pfam00810
      Location:72 → 215
      ER_lumen_recept; ER lumen protein retaining receptor
    Nucleotide Protein
    Heading Accession and Version

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