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    LOC4346056 spindle pole body component 110 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346056, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4346056
    Gene description
    spindle pole body component 110
    Locus tag
    OSNPB_080519400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    bip129
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    Genomic context

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    See LOC4346056 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (25945393..25950295, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (25799141..25804329, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene L-gulonolactone oxidase 2 Neighboring gene xylanase inhibitor protein 1-like Neighboring gene uncharacterized LOC4346057 Neighboring gene protein ROLLING AND ERECT LEAF 2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A network of rice genes associated with stress response and seed development. Cooper B, et al. Proc Natl Acad Sci U S A, 2003 Apr 15. PMID 12684538, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    spindle pole body component 110
    Names
    BRI1-KD interacting protein 129
    Os08g0519400
    P0689E12.19
    putative stress related-like protein interactor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      25945393..25950295 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795609.3 → XP_015651095.1  spindle pole body component 110 isoform X2

      UniProtKB/TrEMBL
      B8B8T9, B9G1U0, Q0J4E1, Q6ZBK6
      Conserved Domains (1) summary
      TIGR02168
      Location:47 → 214
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    2. XM_015795608.3 → XP_015651094.1  spindle pole body component 110 isoform X1

      UniProtKB/TrEMBL
      B8B8T9, B9G1U0
      Conserved Domains (1) summary
      TIGR02168
      Location:47 → 214
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    Nucleotide Protein
    Heading Accession and Version

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