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    LOC4326503 glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326503, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4326503
    Gene description
    glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a
    Locus tag
    OSNPB_010348600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 57.8), roots before flowering (RPKM 53.5) and 6 other tissues See more
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    Genomic context

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    See LOC4326503 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (13931547..13937452)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (13887277..13893142)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene non-specific lipid transfer protein GPI-anchored 25 Neighboring gene macrodontain-1 Neighboring gene small nucleolar RNA SNOR75 Neighboring gene small nucleolar RNA Z105 Neighboring gene large ribosomal subunit protein uL23

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3-hydroxyacyl-CoA dehydrogenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables NAD+ binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fatty acid beta-oxidation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in peroxisome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a
    Names
    B1051E10.10
    Os01g0348600
    P0440D10.31
    glyoxysomal fatty acid beta-chain multifunctional protein
    putative tetrafunctional protein of glyoxysomal fatty acid beta-oxidation

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      13931547..13937452
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765589.3 → XP_015621075.1  glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a

      UniProtKB/TrEMBL
      A0A067Y3P2, A0A5S6R8W1, A0A8J8XZW7, B8A7J7, Q0JMZ1, Q7F209, Q94CN1
      Conserved Domains (1) summary
      PRK11154
      Location:13 → 715
      fadJ; fatty acid oxidation complex subunit alpha FadJ
    Nucleotide Protein
    Heading Accession and Version

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