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    LOC4337409 uncharacterized LOC4337409 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337409, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4337409
    Gene description
    uncharacterized LOC4337409
    Locus tag
    OSNPB_040677800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 6.0), flowers (RPKM 5.8) and 6 other tissues See more
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    Genomic context

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    See LOC4337409 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (35146244..35151224, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (34626280..34630623, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4337407 Neighboring gene katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 Neighboring gene uncharacterized LOC136356326 Neighboring gene uncharacterized LOC4337412

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4337409
    Names
    HBS1-like protein
    Os04g0677800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      35146244..35151224 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066310101.1 → XP_066166198.1  uncharacterized protein LOC4337409 isoform X3

    2. XM_015778311.3 → XP_015633797.1  uncharacterized protein LOC4337409 isoform X5

      UniProtKB/TrEMBL
      B9FDB1
      Conserved Domains (4) summary
      cd01883
      Location:140 → 360
      EF1_alpha; Elongation Factor 1-alpha (EF1-alpha) protein family
      COG5256
      Location:139 → 565
      TEF1; Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
      cd16267
      Location:367 → 451
      HBS1-like_II; Domain II of Hbs1-like proteins
      cd04093
      Location:455 → 563
      HBS1_C_III; C-terminal domain of Hsp70 subfamily B suppressor 1 (HBS1)

    3. XM_066310103.1 → XP_066166200.1  uncharacterized protein LOC4337409 isoform X4

    4. XM_066310099.1 → XP_066166196.1  uncharacterized protein LOC4337409 isoform X2

    5. XM_066310097.1 → XP_066166194.1  uncharacterized protein LOC4337409 isoform X1

      UniProtKB/TrEMBL
      A0A0N7KJX6, Q0J905

    6. XM_066310102.1 → XP_066166199.1  uncharacterized protein LOC4337409 isoform X3

    7. XM_066310100.1 → XP_066166197.1  uncharacterized protein LOC4337409 isoform X2

    8. XM_066310098.1 → XP_066166195.1  uncharacterized protein LOC4337409 isoform X1

      UniProtKB/TrEMBL
      A0A0N7KJX6, Q0J905
    Nucleotide Protein
    Heading Accession and Version

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