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    LOC9272161 dolichol-phosphate mannose synthase subunit 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9272161, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9272161
    Gene description
    dolichol-phosphate mannose synthase subunit 3
    Locus tag
    OSNPB_020749450
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0431B06.3
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    Genomic context

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    See LOC9272161 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (31992405..31994042, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (31495938..31498887, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene shikimate kinase 1, chloroplastic-like Neighboring gene uncharacterized LOC136355083 Neighboring gene uncharacterized LOC136355084 Neighboring gene exocyst complex component SEC6 Neighboring gene putative laccase-9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in GPI anchor biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of dolichol-phosphate-mannose synthase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    dolichol-phosphate mannose synthase subunit 3
    Names
    OSJNBa0078N11.47
    Os02g0749450
    dolichol-phosphate mannosyltransferase subunit 3
    dolichol-phosphate mannosyltransferase-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      31992405..31994042 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771274.3 → XP_015626760.1  dolichol-phosphate mannose synthase subunit 3

      UniProtKB/TrEMBL
      A2X9M6, B7F922, C7IZ41
      Conserved Domains (1) summary
      pfam08285
      Location:1 → 84
      DPM3; Dolichol-phosphate mannosyltransferase subunit 3 (DPM3)
    Nucleotide Protein
    Heading Accession and Version

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