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    LOC4326471 salt stress-induced protein-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326471, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4326471
    Gene description
    salt stress-induced protein-like
    Locus tag
    OSNPB_010348900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    ML; MRL; salT
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    Genomic context

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    See LOC4326471 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (13947459..13948801, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (13903267..13904726, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA Z105 Neighboring gene large ribosomal subunit protein uL23 Neighboring gene uncharacterized LOC4326470 Neighboring gene serine/threonine-protein phosphatase PP1 Neighboring gene uncharacterized LOC4326474

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Magnaporthe Chitinase Interacts with a Rice Jacalin-Related Lectin to Promote Host Colonization. Han Y, et al. Plant Physiol, 2019 Apr. PMID 30696749, Free PMC Article
    2. Leaf senescence in rice plants: cloning and characterization of senescence up-regulated genes. Lee RH, et al. J Exp Bot, 2001 May. PMID 11432928
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. induced by pathogen-associated molecular patterns and Magnaporthe oryzae infection
      Title: A Magnaporthe Chitinase Interacts with a Rice Jacalin-Related Lectin to Promote Host Colonization.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    salt stress-induced protein
    Names
    B1051E10.18
    LOC_Os01g24710
    P0440D10.39
    Protein lectin-like
    Protein mannose-binding lectin
    lectin-like protein
    salT gene product
    salt-induced protein
    salt-responsive protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001397999.1 → NP_001384928.1  salt stress-induced protein

      Status: VALIDATED

      Source sequence(s)
      AK062520, AU161929
      UniProtKB/Swiss-Prot
      Q0JMY8
      UniProtKB/TrEMBL
      A0A8J8XGS3, B7E7K3, B9EWB8
      Conserved Domains (1) summary
      cd09612
      Location:14 → 144
      Jacalin; Jacalin-like plant lectin domain

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      13947459..13948801 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0JMY8.1 GenPept UniProtKB/Swiss-Prot:Q0JMY8

    Gene LinkOut

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    Research Materials