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    LOC4344475 putative methylesterase 14, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344475, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4344475
    Gene description
    putative methylesterase 14, chloroplastic
    Locus tag
    OSNPB_080110000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 30.5), roots before flowering (RPKM 26.0) and 6 other tissues See more
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    Genomic context

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    See LOC4344475 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (525008..528899, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (519628..523875, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase-like protein CCR4 Neighboring gene uncharacterized LOC4344474 Neighboring gene uncharacterized LOC4344476 Neighboring gene protein Rf1, mitochondrial

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables methyl indole-3-acetate esterase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables methyl jasmonate esterase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables methyl salicylate esterase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in jasmonic acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in salicylic acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative methylesterase 14, chloroplastic
    Names
    Os08g0110000
    P0007D08.23
    putative PIR7A protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      525008..528899 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795232.3 → XP_015650718.1  putative methylesterase 14, chloroplastic

      UniProtKB/TrEMBL
      A2YQI8, Q0J8I6, Q6ZC62
      Conserved Domains (1) summary
      cl21494
      Location:118 → 364
      Abhydrolase; alpha/beta hydrolases
    Nucleotide Protein
    Heading Accession and Version

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