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    LOC4337347 methylthioribose kinase 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337347, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4337347
    Gene description
    methylthioribose kinase 1-like
    Locus tag
    OSNPB_040669800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    MTK1; OsMTK1; OsJ_16565
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    Genomic context

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    See LOC4337347 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (34675302..34678590, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (34155508..34158700, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene probable carboxylesterase Os04g0669600 Neighboring gene carboxylesterase Neighboring gene methylthioribose kinase 2-like Neighboring gene reticulon-like protein B11

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional analysis of methylthioribose kinase genes in plants. Sauter M, et al. Plant Physiol, 2004 Dec. PMID 15557090, Free PMC Article
    2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables S-methyl-5-thioribose kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in methionine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    methylthioribose kinase 1
    Names
    LOC_Os04g57400
    MTR kinase 1
    OSJNBa0043A12.24
    NP_001406864.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419935.1 → NP_001406864.1  methylthioribose kinase 1

      Status: VALIDATED

      Source sequence(s)
      CA999540, CB646354, CB650766, CI158613, CI597408, CI623272
      UniProtKB/Swiss-Prot
      A0A0P0WG57, Q6PMT1, Q7XR61
      UniProtKB/TrEMBL
      A0A0P0WG91

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      34675302..34678590 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7XR61.1 GenPept UniProtKB/Swiss-Prot:Q7XR61

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