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    LOC4324100 probable calcium-binding protein CML12 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324100, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4324100
    Gene description
    probable calcium-binding protein CML12
    Locus tag
    OSNPB_010604500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CML12
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    Genomic context

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    See LOC4324100 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (24385232..24386213, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (23810476..23811678, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene receptor-like protein EIX1 Neighboring gene receptor-like protein EIX2 Neighboring gene uncharacterized LOC4324099 Neighboring gene uncharacterized LOC4324101 Neighboring gene uncharacterized LOC4324102 Neighboring gene AAA-ATPase At3g50940 Neighboring gene uncharacterized LOC4324208

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in trans-Golgi network membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable calcium-binding protein CML12
    Names
    Calmodulin-like protein 12
    LOC_Os01g41990
    P0681B11.28

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      24385232..24386213 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026026975.2 → XP_025882760.1  probable calcium-binding protein CML12

      UniProtKB/Swiss-Prot
      B7EA40, Q5ZD81
      UniProtKB/TrEMBL
      A2WSC3
      Conserved Domains (1) summary
      PTZ00184
      Location:87 → 236
      PTZ00184; calmodulin; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5ZD81.1 GenPept UniProtKB/Swiss-Prot:Q5ZD81

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