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    LOC4330297 homeobox-leucine zipper protein ROC5-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330297, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4330297
    Gene description
    homeobox-leucine zipper protein ROC5-like
    Locus tag
    OSNPB_020674800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    Roc5; GL2-5; OsJ_07908
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 16.3), flower buds (RPKM 9.6) and 6 other tissues See more
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    Genomic context

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    See LOC4330297 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (27975448..27982496, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (27487865..27494909, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107278263 Neighboring gene E3 ubiquitin-protein ligase At1g12760 Neighboring gene uncharacterized LOC107280016 Neighboring gene cytochrome P450 87A3-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homeobox-leucine zipper protein ROC5
    Names
    GL2-type homeobox genes
    GL2-type homeodomain protein
    GLABRA 2-like homeobox protein 5
    HD-ZIP protein ROC5
    Homeodomain transcription factor ROC5
    LOC_Os02g45250
    P0657H12.28
    Protein RICE OUTERMOST CELL-SPECIFIC 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001416820.1 → NP_001403749.1  homeobox-leucine zipper protein ROC5

      Status: VALIDATED

      Source sequence(s)
      AB101648, AK111544, AU108690
      UniProtKB/Swiss-Prot
      B9F1M1, Q6EPF0, Q7Y0V8
      UniProtKB/TrEMBL
      B8AGG2

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      27975448..27982496 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6EPF0.1 GenPept UniProtKB/Swiss-Prot:Q6EPF0

    Gene LinkOut

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