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    LOC4343835 nuclear transport factor 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343835, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4343835
    Gene description
    nuclear transport factor 2
    Locus tag
    OSNPB_070603100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 27.9), mature seeds (RPKM 25.2) and 6 other tissues See more
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    Genomic context

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    See LOC4343835 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (24879813..24884714, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (24654880..24659867, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene ninja-family protein Os07g0602900-like Neighboring gene uncharacterized LOC107281677 Neighboring gene U3 small nucleolar RNA-associated protein 18 homolog Neighboring gene protein LONGIFOLIA 1 Neighboring gene uncharacterized LOC9271653

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear transport factor 2
    Names
    OSJNBb0018H10.27
    OSJNBb0039M16.17
    Os07g0603100
    putative Ras-GTPase activating protein SH3 domain-binding protein 2
    ras GTPase-activating protein-binding protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      24879813..24884714 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792400.3 → XP_015647886.1  nuclear transport factor 2

      UniProtKB/TrEMBL
      A0A0P0X8L8, A2YNG6, A3BLY1, Q6YW02
      Conserved Domains (4) summary
      smart00360
      Location:320 → 379
      RRM; RNA recognition motif
      cd00780
      Location:13 → 134
      NTF2; Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many ...
      PTZ00110
      Location:442 → 515
      PTZ00110; helicase; Provisional
      TIGR04260
      Location:411 → 457
      Cyano_gly_rpt; rSAM-associated Gly-rich repeat protein
    Nucleotide Protein
    Heading Accession and Version

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