U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4329863 mRNA export factor GLE1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329863, updated on 17-Jul-2024

    Summary

    Gene symbol
    LOC4329863
    Gene description
    mRNA export factor GLE1
    Locus tag
    OSNPB_020596100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1568_B05.2-1; OJ1568_B05.2-2; OJ1126_D09.35-1; OJ1126_D09.35-2
    Expression
    Ubiquitous expression in mature seeds (RPKM 15.0), flower buds (RPKM 7.7) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Location:
    chromosome: 2
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (23614625..23622841, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (23132062..23140543, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene high-affinity nitrate transporter-activating protein 2.1 Neighboring gene rhodanese-like domain-containing protein 11, chloroplastic Neighboring gene glycosyl hydrolase 5 family protein Neighboring gene cytochrome P450 86B1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General gene information

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables inositol hexakisphosphate binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    enables phospholipid binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    enables translation initiation factor binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in poly(A)+ mRNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    part_of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    part_of nuclear pore cytoplasmic filaments IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    mRNA export factor GLE1
    Names
    Os02g0596100
    protein GLE1
    putative GLE1L protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      23614625..23622841 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767359.3XP_015622845.1  mRNA export factor GLE1

      UniProtKB/TrEMBL
      A0A0P0VL78, B7EM97, Q0DZV5
      Conserved Domains (2) summary
      PTZ00121
      Location:100259
      PTZ00121; MAEBL; Provisional
      pfam07817
      Location:351557
      GLE1; GLE1-like protein