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    LOC4344777 clp protease adapter protein ClpF, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344777, updated on 12-Jul-2024

    Summary

    Gene symbol
    LOC4344777
    Gene description
    clp protease adapter protein ClpF, chloroplastic
    Locus tag
    OSNPB_080172200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1590_E05.35-1
    Expression
    Broad expression in leaves before flowering (RPKM 84.0), roots after flowering (RPKM 77.2) and 5 other tissues See more
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    Genomic context

    See LOC4344777 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (4285290..4290851)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (4236970..4242566)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene DNA-directed RNA polymerases IV and V subunit 2 Neighboring gene protein MIZU-KUSSEI 1 Neighboring gene uncharacterized LOC136351371 Neighboring gene uncharacterized LOC136351372

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    clp protease adapter protein ClpF, chloroplastic
    Names
    Os08g0172200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      4285290..4290851
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795218.2XP_015650704.1  clp protease adapter protein ClpF, chloroplastic

      UniProtKB/TrEMBL
      B9FZB0, Q0J7Q1, Q6YYJ6
      Conserved Domains (2) summary
      pfam02151
      Location:157187
      UVR; UvrB/uvrC motif
      pfam08755
      Location:204301
      YccV-like; Hemimethylated DNA-binding protein YccV like