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    LOC4351321 chalcone isomerase-like protein 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351321, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4351321
    Gene description
    chalcone isomerase-like protein 2
    Locus tag
    OSNPB_120115700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4351321 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (790776..792795, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (766594..768669, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene probable non-specific lipid-transfer protein 3 Neighboring gene RING-H2 finger protein ATL74 Neighboring gene uncharacterized LOC4351322 Neighboring gene protein TOC75, chloroplastic-like Neighboring gene vacuolar-sorting receptor 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables intramolecular lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chalcone isomerase-like protein 2
    Names
    Os12g0115700
    probable chalcone--flavonone isomerase 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      790776..792795 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764457.3 → XP_015619943.1  chalcone isomerase-like protein 2 isoform X1

      UniProtKB/TrEMBL
      B9G921
      Conserved Domains (1) summary
      PLN02804
      Location:58 → 265
      PLN02804; chalcone isomerase

    2. XM_015764458.3 → XP_015619944.1  chalcone isomerase-like protein 2 isoform X2

      UniProtKB/TrEMBL
      A3CEC6, Q0IQK6, Q2QYK6
      Conserved Domains (1) summary
      PLN02804
      Location:3 → 210
      PLN02804; chalcone isomerase
    Nucleotide Protein
    Heading Accession and Version

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