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    LOC4326678 uncharacterized LOC4326678 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326678, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4326678
    Gene description
    uncharacterized LOC4326678
    Locus tag
    OSNPB_010623500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4326678 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (25473341..25478142)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (24894543..24899507)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene protein TOO MANY MOUTHS Neighboring gene S-type anion channel SLAH2 Neighboring gene polygalacturonase Neighboring gene uncharacterized LOC9267700 Neighboring gene neutral ceramidase-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. OsCDC48/48E complex is required for plant survival in rice (Oryza sativa L.). Shi L, et al. Plant Mol Biol, 2019 May. PMID 30937701, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrial outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4326678
    Names
    Os01g0623500
    P0501G01.25
    cell division cycle gene CDC48-like
    peroxisomal biogenesis factor 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      25473341..25478142
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765801.2 → XP_015621287.1  uncharacterized protein LOC4326678

      UniProtKB/TrEMBL
      A2WSS0, A2ZVJ3, Q0JL48, Q9AX97
      Conserved Domains (2) summary
      pfam17862
      Location:658 → 694
      AAA_lid_3; AAA+ lid domain
      cl38936
      Location:470 → 635
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein
    Heading Accession and Version

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