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    LOC9267947 probable metal-nicotianamine transporter YSL14 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9267947, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC9267947
    Gene description
    probable metal-nicotianamine transporter YSL14
    Locus tag
    OSNPB_020633300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    YSL14; OsYSL14; OJ1643_A10.18
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    Genomic context

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    See LOC9267947 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (25886112..25890648)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (25399797..25404213)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4330065 Neighboring gene small ribosomal subunit protein mL103 (rPPR7) Neighboring gene replication protein A 32 kDa subunit B-like Neighboring gene putative protein phosphatase 2C 23

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oligopeptide transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable metal-nicotianamine transporter YSL14
    Names
    LOC_Os02g42220
    Protein YELLOW STRIPE LIKE 14
    oligopeptide transporter OPT-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001416753.1 → NP_001403682.1  probable metal-nicotianamine transporter YSL14

      Status: VALIDATED

      Source sequence(s)
      AB164645, AP014958, CA999371, CI135351, CI740087, D24925
      UniProtKB/Swiss-Prot
      Q0DZB5, Q3V7B7, Q6H7J6

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      25886112..25890648
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6H7J6.1 GenPept UniProtKB/Swiss-Prot:Q6H7J6

    Gene LinkOut

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