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    LOC4350401 serine carboxypeptidase-like 7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350401, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4350401
    Gene description
    serine carboxypeptidase-like 7
    Locus tag
    OSNPB_110432900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in mature seeds (RPKM 99.1), flower buds (RPKM 92.8) and 5 other tissues See more
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    Genomic context

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    See LOC4350401 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (13971699..13979664, complement)

    Chromosome 11 - NC_029266.1Genomic Context describing neighboring genes Neighboring gene very-long-chain 3-oxoacyl-CoA reductase-like protein At1g24470 Neighboring gene uncharacterized LOC4350400 Neighboring gene pentatricopeptide repeat-containing protein At2g35030, mitochondrial Neighboring gene signal peptide peptidase-like 2 Neighboring gene uncharacterized LOC107279523

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029266.1 Chromosome 11 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acyltransferase activity, transferring groups other than amino-acyl groups IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables serine-type carboxypeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in secondary metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine carboxypeptidase-like 7
    Names
    Os11g0432900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029266.1 Reference IRGSP-1.0 Primary Assembly

      Range
      13971699..13979664 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026021273.1 → XP_025877058.1  serine carboxypeptidase-like 7 isoform X2

      UniProtKB/TrEMBL
      H2KW76
      Conserved Domains (1) summary
      pfam00450
      Location:47 → 425
      Peptidase_S10; Serine carboxypeptidase

    2. XM_015761856.2 → XP_015617342.1  serine carboxypeptidase-like 7 isoform X1

      UniProtKB/TrEMBL
      H2KW76, Q0IT06, Q2R5M2
      Conserved Domains (1) summary
      pfam00450
      Location:47 → 475
      Peptidase_S10; Serine carboxypeptidase
    Nucleotide Protein
    Heading Accession and Version

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