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    LOC4328043 receptor-like serine/threonine-protein kinase NCRK [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328043, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4328043
    Gene description
    receptor-like serine/threonine-protein kinase NCRK
    Locus tag
    OSNPB_020110600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flowers (RPKM 8.3), flower buds (RPKM 1.9) and 3 other tissues See more
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    Genomic context

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    See LOC4328043 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (572605..578908, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (566064..572940, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein mL102 (rPPR5) Neighboring gene uncharacterized LOC4328042 Neighboring gene uncharacterized LOC4328044 Neighboring gene uncharacterized LOC107277795

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    receptor-like serine/threonine-protein kinase NCRK
    Names
    Os02g0110600
    P0501G04.13-1
    P0501G04.13-2
    P0501G04.13-3
    putative receptor protein kinase PERK1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      572605..578908 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066307953.1 → XP_066164050.1  receptor-like serine/threonine-protein kinase NCRK isoform X2

      UniProtKB/TrEMBL
      Q6Z8Z3

    2. XM_015769805.3 → XP_015625291.1  receptor-like serine/threonine-protein kinase NCRK isoform X1

      UniProtKB/TrEMBL
      A0A0P0VDT3, Q6Z8Z3, Q6Z8Z4
      Conserved Domains (1) summary
      cd14066
      Location:241 → 518
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    3. XM_066307957.1 → XP_066164054.1  receptor-like serine/threonine-protein kinase NCRK isoform X4

      UniProtKB/TrEMBL
      A0A0P0VDS8, Q6Z8Z2, Q6Z8Z3

    4. XM_015769811.3 → XP_015625297.1  receptor-like serine/threonine-protein kinase NCRK isoform X3

      UniProtKB/TrEMBL
      Q6Z8Z3
      Conserved Domains (1) summary
      cd14066
      Location:233 → 510
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    5. XM_066307960.1 → XP_066164057.1  receptor-like serine/threonine-protein kinase NCRK isoform X4

      UniProtKB/TrEMBL
      A0A0P0VDS8, Q6Z8Z2, Q6Z8Z3

    6. XM_026023129.2 → XP_025878914.1  receptor-like serine/threonine-protein kinase NCRK isoform X3

      UniProtKB/TrEMBL
      Q6Z8Z3
      Conserved Domains (1) summary
      cd14066
      Location:233 → 510
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    7. XM_066307958.1 → XP_066164055.1  receptor-like serine/threonine-protein kinase NCRK isoform X4

      UniProtKB/TrEMBL
      A0A0P0VDS8, Q6Z8Z2, Q6Z8Z3

    8. XM_015769809.3 → XP_015625295.1  receptor-like serine/threonine-protein kinase NCRK isoform X3

      UniProtKB/TrEMBL
      Q6Z8Z3
      Conserved Domains (1) summary
      cd14066
      Location:233 → 510
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    9. XM_066307956.1 → XP_066164053.1  receptor-like serine/threonine-protein kinase NCRK isoform X3

      UniProtKB/TrEMBL
      Q6Z8Z3

    10. XM_066307959.1 → XP_066164056.1  receptor-like serine/threonine-protein kinase NCRK isoform X4

      UniProtKB/TrEMBL
      A0A0P0VDS8, Q6Z8Z2, Q6Z8Z3

    11. XM_026023127.2 → XP_025878912.1  receptor-like serine/threonine-protein kinase NCRK isoform X3

      UniProtKB/TrEMBL
      Q6Z8Z3
      Conserved Domains (1) summary
      cd14066
      Location:233 → 510
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    12. XM_066307955.1 → XP_066164052.1  receptor-like serine/threonine-protein kinase NCRK isoform X3

      UniProtKB/TrEMBL
      Q6Z8Z3

    13. XM_066307954.1 → XP_066164051.1  receptor-like serine/threonine-protein kinase NCRK isoform X3

      UniProtKB/TrEMBL
      Q6Z8Z3

    14. XM_015769819.3 → XP_015625305.1  receptor-like serine/threonine-protein kinase NCRK isoform X4

      UniProtKB/TrEMBL
      A0A0P0VDS8, Q6Z8Z2, Q6Z8Z3
      Conserved Domains (1) summary
      cd14066
      Location:232 → 509
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    15. XM_015769807.3 → XP_015625293.1  receptor-like serine/threonine-protein kinase NCRK isoform X3

      UniProtKB/TrEMBL
      Q6Z8Z3
      Conserved Domains (1) summary
      cd14066
      Location:233 → 510
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
    Nucleotide Protein
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