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    LOC4331118 uncharacterized LOC4331118 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331118, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4331118
    Gene description
    uncharacterized LOC4331118
    Locus tag
    OSNPB_020814300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1293_E04.19
    Expression
    Biased expression in roots before flowering (RPKM 1.6), flower buds (RPKM 0.4) and 2 other tissues See more
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    Genomic context

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    See LOC4331118 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (35398935..35399831)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (34900358..34901387)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene phospholipid--sterol O-acyltransferase Neighboring gene very-long-chain aldehyde decarbonylase GL1-6-like Neighboring gene cytochrome c1 2, heme protein, mitochondrial Neighboring gene protein PHOSPHATE STARVATION RESPONSE 1 Neighboring gene 60S ribosomal protein L23

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables electron transfer activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4331118
    Names
    OSJNBa0053L11.41
    Os02g0814300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      35398935..35399831
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769328.3 → XP_015624814.1  uncharacterized protein LOC4331118

      UniProtKB/TrEMBL
      A3ACL8, Q6K3D7
    Nucleotide Protein
    Heading Accession and Version

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