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    LOC4337363 auxin response factor 12-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337363, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4337363
    Gene description
    auxin response factor 12-like
    Locus tag
    OSNPB_040671900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    ARF8; ARF12; OsARF8; OsJ_16583
    Expression
    Biased expression in flowers (RPKM 84.6), flower buds (RPKM 73.4) and 3 other tissues See more
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (34798300..34805733, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (34278521..34285864, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene protein DJ-1 homolog D Neighboring gene zinc finger CCCH domain-containing protein 32-like Neighboring gene uncharacterized LOC136356087 Neighboring gene phytosulfokine receptor 1 Neighboring gene uncharacterized LOC4337365

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to hormone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    auxin response factor 12
    Names
    LOC_Os04g57610
    OSJNBb0004A17.6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419944.1 → NP_001406873.1  auxin response factor 12

      Status: VALIDATED

      Source sequence(s)
      AK067150, AK071455, AU225805, CI124287, CI342716, CI676867
      UniProtKB/Swiss-Prot
      A2XYU3, Q258Y5

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      34798300..34805733 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066309205.1 → XP_066165302.1  auxin response factor 12 isoform X3

      UniProtKB/Swiss-Prot
      A2XYU3, Q258Y5

    2. XM_015781388.3 → XP_015636874.1  auxin response factor 12 isoform X2

      UniProtKB/Swiss-Prot
      A2XYU3, B9FD89, Q0J951, Q258Y5, Q7XPI3, Q8S977
      Conserved Domains (3) summary
      pfam02309
      Location:710 → 799
      AUX_IAA; AUX/IAA family
      pfam02362
      Location:135 → 237
      B3; B3 DNA binding domain
      pfam06507
      Location:267 → 344
      Auxin_resp; Auxin response factor

    3. XM_015781387.3 → XP_015636873.1  auxin response factor 12 isoform X1

      UniProtKB/Swiss-Prot
      A2XYU3, Q258Y5
      Conserved Domains (3) summary
      pfam02309
      Location:712 → 796
      AUX_IAA; AUX/IAA family
      pfam02362
      Location:138 → 240
      B3; B3 DNA binding domain
      pfam06507
      Location:270 → 347
      Auxin_resp; Auxin response factor
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0J951.1 GenPept UniProtKB/Swiss-Prot:Q0J951

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