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    LOC4328118 glutamate--tRNA ligase, chloroplastic/mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328118, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4328118
    Gene description
    glutamate--tRNA ligase, chloroplastic/mitochondrial
    Locus tag
    OSNPB_020121000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1020_C02.10
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 32.8), roots after flowering (RPKM 20.4) and 6 other tissues See more
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    Genomic context

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    See LOC4328118 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (1097306..1102894, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (1090398..1095997, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene rac-like GTP-binding protein 6 Neighboring gene bifunctional protein FolD 4, chloroplastic Neighboring gene glycine-rich protein 2 Neighboring gene uncharacterized LOC4328120

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. A Rice Glutamyl-tRNA Synthetase Modulates Early Anther Cell Division and Patterning. Yang X, et al. Plant Physiol, 2018 Jun. PMID 29720556, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables glutamate-tRNA ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables tRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glutamyl-tRNA aminoacylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glutamate--tRNA ligase, chloroplastic/mitochondrial
    Names
    OSJNBb0088N06.19
    Os02g0121000
    putative glutamate-tRNA ligase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      1097306..1102894 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767357.3 → XP_015622843.1  glutamate--tRNA ligase, chloroplastic/mitochondrial

      UniProtKB/TrEMBL
      A0A0P0VE61, B8AGK7, B9F261, Q6YUS0
      Conserved Domains (1) summary
      PLN02627
      Location:1 → 540
      PLN02627; glutamyl-tRNA synthetase
    Nucleotide Protein
    Heading Accession and Version

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