U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4348796 E3 ubiquitin-protein ligase RZFP34 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348796, updated on 17-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4348796
    Gene description
    E3 ubiquitin-protein ligase RZFP34
    Locus tag
    OSNPB_100456800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 31.6), flower buds (RPKM 19.8) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4348796 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (17371303..17375171, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (16704956..16708503, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4348794 Neighboring gene ras-related protein RABC2a Neighboring gene midasin Neighboring gene uncharacterized LOC4348798

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    E3 ubiquitin-protein ligase RZFP34
    Names
    Os10g0456800
    putative RING finger and CHY zinc finger domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      17371303..17375171 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757233.3 → XP_015612719.1  E3 ubiquitin-protein ligase RZFP34 isoform X1

      UniProtKB/TrEMBL
      B9G627, Q337P2, Q7XDQ1
      Conserved Domains (3) summary
      pfam05495
      Location:10 → 92
      zf-CHY; CHY zinc finger
      pfam14599
      Location:193 → 251
      zinc_ribbon_6; Zinc-ribbon
      cl17238
      Location:145 → 189
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    2. XM_015757234.3 → XP_015612720.1  E3 ubiquitin-protein ligase RZFP34 isoform X2

      UniProtKB/TrEMBL
      Q7XDQ1
      Conserved Domains (2) summary
      pfam05495
      Location:3 → 85
      zf-CHY; CHY zinc finger
      pfam14599
      Location:186 → 244
      zinc_ribbon_6; Zinc-ribbon
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials