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    LOC4324787 transcription repressor OFP8-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324787, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324787
    Gene description
    transcription repressor OFP8-like
    Locus tag
    OSNPB_010864000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OFP8; OsOFP8; OsJ_04171
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    Genomic context

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    See LOC4324787 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (38023501..38025479, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (37396189..37397818, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene transcription repressor OFP13 Neighboring gene serine/threonine-protein phosphatase 7 long form homolog Neighboring gene uncharacterized LOC4324789 Neighboring gene NDR1/HIN1-like protein 10

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription repressor OFP8
    Names
    LOC_Os01g64430
    OVATE family protein 8
    Os01g0864000
    P0423B08.30

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001428157.1 → NP_001415086.1  transcription repressor OFP8

      Status: VALIDATED

      Source sequence(s)
      AK064616, AK106759, CI237118
      UniProtKB/Swiss-Prot
      Q0JHH3, Q94CV1
      UniProtKB/TrEMBL
      A2WX95

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      38023501..38025479 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94CV1.1 GenPept UniProtKB/Swiss-Prot:Q94CV1

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