LOC4336122 probable amino acid permease 7 [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4336122
Gene description: probable amino acid permease 7
Locus tag: OSNPB_040470700
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression: Broad expression in flower buds (RPKM 18.8), flowers (RPKM 14.2) and 5 other tissues See more
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Genomic context

Location:: chromosome: 4

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	4	NC_089038.1 (24007724..24017840, complement)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	4	NC_029259.1 (23512786..23523113, complement)

Chromosome 4 - NC_089038.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables amino acid transmembrane transporter activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in amino acid transmembrane transport	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: probable amino acid permease 7

Names: Os04g0470700

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001424597.1 → NP_001411526.1 probable amino acid permease 7

Status: VALIDATED

Source sequence(s)

AK071044

UniProtKB/TrEMBL

A0A0P0WBS2, Q01J66, Q7XQN0

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

NC_089038.1 Reference ASM3414082v1 Primary Assembly

Range

24007724..24017840 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015778002.3 → XP_015633488.1 probable amino acid permease 7 isoform X1

UniProtKB/TrEMBL

A2XUH9

Conserved Domains (1) summary

pfam01490
Location:30 → 462

Aa_trans; Transmembrane amino acid transporter protein
XM_015778003.3 → XP_015633489.1 probable amino acid permease 7 isoform X2

Conserved Domains (1) summary

cl00456
Location:91 → 411

SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain