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    LOC9269210 glycine-rich RNA-binding protein 4, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9269210, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC9269210
    Gene description
    glycine-rich RNA-binding protein 4, mitochondrial
    Locus tag
    OSNPB_010502800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 21.9), leaves after flowering (RPKM 20.7) and 6 other tissues See more
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    Genomic context

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    See LOC9269210 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (17983025..17989598, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (17422806..17429406, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136357069 Neighboring gene probable histone H2A.5 Neighboring gene histone H2B.1-like Neighboring gene uncharacterized LOC136355916 Neighboring gene uncharacterized LOC136356108

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glycine-rich RNA-binding protein 4, mitochondrial
    Names
    Os01g0502800
    P0507H06.23

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001428113.1 → NP_001415042.1  glycine-rich RNA-binding protein 4, mitochondrial

      Status: VALIDATED

      Source sequence(s)
      AK059957, CB640084, CI393902

    RNA

    1. NR_190229.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK059957

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      17983025..17989598 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026025921.2 → XP_025881706.1  glycine-rich RNA-binding protein 4, mitochondrial isoform X1

      Conserved Domains (1) summary
      smart00360
      Location:25 → 96
      RRM; RNA recognition motif

    2. XM_066307251.1 → XP_066163348.1  glycine-rich RNA-binding protein 4, mitochondrial isoform X1

    3. XM_066307244.1 → XP_066163341.1  glycine-rich RNA-binding protein 4, mitochondrial isoform X1

    4. XM_066307236.1 → XP_066163333.1  glycine-rich RNA-binding protein 4, mitochondrial isoform X1

    5. XM_066307246.1 → XP_066163343.1  glycine-rich RNA-binding protein 4, mitochondrial isoform X1

    6. XM_026025918.2 → XP_025881703.1  glycine-rich RNA-binding protein 4, mitochondrial isoform X1

      Conserved Domains (1) summary
      smart00360
      Location:25 → 96
      RRM; RNA recognition motif

    7. XM_066307239.1 → XP_066163336.1  glycine-rich RNA-binding protein 4, mitochondrial isoform X1

    8. XM_066307255.1 → XP_066163352.1  glycine-rich RNA-binding protein 4, mitochondrial isoform X1

    9. XM_026025915.2 → XP_025881700.1  glycine-rich RNA-binding protein 4, mitochondrial isoform X1

      Conserved Domains (1) summary
      smart00360
      Location:25 → 96
      RRM; RNA recognition motif

    10. XM_066307231.1 → XP_066163328.1  glycine-rich RNA-binding protein 4, mitochondrial isoform X1

    11. XM_066307224.1 → XP_066163321.1  glycine-rich RNA-binding protein 4, mitochondrial isoform X1

    12. XM_026025911.2 → XP_025881696.1  glycine-rich RNA-binding protein 4, mitochondrial isoform X1

      Conserved Domains (1) summary
      smart00360
      Location:25 → 96
      RRM; RNA recognition motif

    13. XM_066307247.1 → XP_066163344.1  glycine-rich RNA-binding protein 4, mitochondrial isoform X1

    14. XM_066307229.1 → XP_066163326.1  glycine-rich RNA-binding protein 4, mitochondrial isoform X1

    15. XM_066307235.1 → XP_066163332.1  glycine-rich RNA-binding protein 4, mitochondrial isoform X1

    16. XM_066307232.1 → XP_066163329.1  glycine-rich RNA-binding protein 4, mitochondrial isoform X1

    17. XM_026025926.2 → XP_025881711.1  glycine-rich RNA-binding protein 4, mitochondrial isoform X1

      Conserved Domains (1) summary
      smart00360
      Location:25 → 96
      RRM; RNA recognition motif
    Nucleotide Protein
    Heading Accession and Version

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