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    LOC9266781 replication protein A 32 kDa subunit C-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9266781, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC9266781
    Gene description
    replication protein A 32 kDa subunit C-like
    Locus tag
    OSNPB_060693300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    RPA2C; RPA32C; OsRPA32C; OsRPA32-3
    Expression
    Broad expression in flowers (RPKM 8.0), flower buds (RPKM 4.4) and 5 other tissues See more
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    Genomic context

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    See LOC9266781 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (29813618..29817301, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (28946942..28950633, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene putative disease resistance protein RGA3 Neighboring gene probable receptor-like serine/threonine-protein kinase At5g57670 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC112939446 Neighboring gene cytoplasmic 60S subunit biogenesis factor REI1 homolog 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Replication protein A2c coupled with replication protein A1c regulates crossover formation during meiosis in rice. Li X, et al. Plant Cell, 2013 Oct. PMID 24122830, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. RPA2c is essential for promoting wild-type levels of crossovers
      Title: Replication protein A2c coupled with replication protein A1c regulates crossover formation during meiosis in rice.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables single-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA replication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in double-strand break repair via homologous recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nucleotide-excision repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of DNA replication factor A complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in chromosome, telomeric region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in site of double-strand break IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    replication protein A 32 kDa subunit C
    Names
    LOC_Os06g47830
    P0550B04.15
    Replication factor A protein 2C
    Replication protein A 2C
    putative replication protein A2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001424151.1 → NP_001411080.1  replication protein A 32 kDa subunit C

      Status: VALIDATED

      Source sequence(s)
      AK102353, CI136472
      UniProtKB/Swiss-Prot
      A0A0P0X0N4, C7J489, Q5Z8L1
      UniProtKB/TrEMBL
      B8B1V8

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      29813618..29817301 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787070.3 → XP_015642556.1  replication protein A 32 kDa subunit C isoform X1

      UniProtKB/TrEMBL
      B8B1V8
      Conserved Domains (2) summary
      cd04478
      Location:85 → 178
      RPA2_DBD_D; A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be ...
      pfam08784
      Location:359 → 429
      RPA_C; Replication protein A C terminal
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5Z8L1.2 GenPept UniProtKB/Swiss-Prot:Q5Z8L1

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