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    LOC4330608 calcium sensing receptor, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330608, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330608
    Gene description
    calcium sensing receptor, chloroplastic
    Locus tag
    OSNPB_020729400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 75.4), roots after flowering (RPKM 45.9) and 4 other tissues See more
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    Genomic context

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    See LOC4330608 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (30856085..30858045, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (30361876..30363766, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene protein trichome birefringence-like 19 Neighboring gene uncharacterized LOC4330607 Neighboring gene proline-rich receptor-like protein kinase PERK10 Neighboring gene F-box/FBD/LRR-repeat protein At1g13570 Neighboring gene ACT domain-containing protein ACR7 Neighboring gene homeobox-leucine zipper protein HOX16-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cellular response to calcium ion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in de-etiolation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of stomatal closure IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calcium sensing receptor, chloroplastic
    Names
    OSJNBa0072H09.17
    Os02g0729400
    extracellular calcium sensing receptor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      30856085..30858045 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767176.3 → XP_015622662.1  calcium sensing receptor, chloroplastic

      UniProtKB/TrEMBL
      Q6S3G1, Q6YWR8
      Conserved Domains (2) summary
      PRK05996
      Location:79 → 175
      motB; MotB family protein
      cd00158
      Location:215 → 329
      RHOD; Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins ...
    Nucleotide Protein
    Heading Accession and Version

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