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    LOC4348760 silicon efflux transporter LSI2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348760, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4348760
    Gene description
    silicon efflux transporter LSI2-like
    Locus tag
    OSNPB_100447900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 76.6), flower buds (RPKM 68.9) and 5 other tissues See more
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    Genomic context

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    See LOC4348760 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (16890448..16904093)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (16225397..16238843)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4348757 Neighboring gene N6-adenosine-methyltransferase non-catalytic subunit MTB Neighboring gene uncharacterized LOC136353485 Neighboring gene UPF0481 protein At3g47200 Neighboring gene uncharacterized LOC107279140 Neighboring gene protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    silicon efflux transporter LSI2-like
    Names
    Os10g0447900
    putative transporter arsB

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      16890448..16904093
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759365.3 → XP_015614851.1  silicon efflux transporter LSI2-like

      UniProtKB/TrEMBL
      A0A0P0XUU1, A0A8J8XJK0, A2Z7Z0, A3C592
      Conserved Domains (1) summary
      cl21473
      Location:1 → 564
      ArsB_NhaD_permease; Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices ...

    2. XM_015759367.3 → XP_015614853.1  silicon efflux transporter LSI2-like

      UniProtKB/TrEMBL
      A0A0P0XUU1, A0A8J8XJK0, A2Z7Z0, A3C592
      Conserved Domains (1) summary
      cl21473
      Location:1 → 564
      ArsB_NhaD_permease; Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices ...
    Nucleotide Protein
    Heading Accession and Version

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