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    LOC4331353 THO complex subunit 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331353, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4331353
    Gene description
    THO complex subunit 1
    Locus tag
    OSNPB_030110400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4331353 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (610004..616892)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (602449..609350)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136355735 Neighboring gene uncharacterized LOC4331352 Neighboring gene kinase-interacting family protein Neighboring gene uncharacterized LOC9267060

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in mRNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription elongation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of THO complex part of transcription export complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    THO complex subunit 1
    Names
    Os03g0110400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      610004..616892
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772350.3 → XP_015627836.1  THO complex subunit 1

      UniProtKB/TrEMBL
      B8ALF8, Q0DVV9, Q10SU9, Q8H7V7
      Conserved Domains (1) summary
      pfam11957
      Location:128 → 539
      efThoc1; THO complex subunit 1 transcription elongation factor
    Nucleotide Protein
    Heading Accession and Version

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